Publications, software, data, theses, and posters. Each research output has a DOI on Zenodo, so it can be cited.
E. Nyandu Kagarabi, E. Saadat, V. Piomponi
Preprint of a paper under review at the IEEE eScience 2026 conference in Naples, Italy. DPCexplorer takes two very large protein-domain datasets and makes them easy to search in a web browser. It uses a database and a 3D structure viewer, and follows the FAIR principles.
Data Management Django Bioinformatics FAIR
Preprint (DOI)Emmanuel Nyandu Kagarabi
Extension of my MSc thesis on classification and early detection of Dengue virus lineages with machine learning, developed in collaboration with CERI (Centre for Epidemic Response and Innovation), Stellenbosch University.
AI for Public Health Genomic Surveillance ClassificationAn open-source Django web app for the DPCfam and DPCstruct datasets, with fast search, file downloads, and a 3D structure viewer. Released on Zenodo so it can be cited and reused.
Software (DOI) GitHubClean, ready-to-use versions of the DPCfam and DPCstruct datasets (CSV, FASTA, and PDB files), prepared on the ORFEO HPC cluster and shared as open data.
Dataset (DOI)SISSA – International School for Advanced Studies (MDMC)
Thesis (DOI)AIMS South Africa & Stellenbosch University
Thesis (DOI)Bukavu Teacher Training College (TTC-Bukavu)
Download ThesisBukavu Teacher Training College (TTC-Bukavu)
Download ThesisPresentation slides walking through the DPCexplorer project, from the annotation gap to the final platform.
Slides (DOI)Poster presentation of my AI for Science Master's thesis on Dengue virus lineage detection (Poster #119).
Poster (DOI)Course material taught to third-year Chemistry-Physics students at TTC-Bukavu.
Download MaterialFoundational material for first-year students at the École des Mines, University of Bukavu (UOB).
Download Material